Yes I did, but I notice its in more places than just where it might be hitting the cover. But yes mostly on that front part.
I never seen another convert top down I don't know how low it goes. But when I look in the rear view I see the top above the part where the tonneau cover sits. So I dunno, my salesperson didn't even know how to put the top down, he didn't know e bar in the truck had to be secure, he was out there for 30 minutes before he figured it out, so really didn't have anyone to ask.